Board Thread:Mod Discussion/@comment-6941549-20140409163403/@comment-17114085-20140409192355

You need to copy the Mods folder from the NMM's directory. Its location depends on where you installed NMM. My for example is in: "C:\Games\Nexus Mod Manager\Skyrim\Mods" Copy this folder somewhere else just in case uninstalling NMM makes you lose your mods.